Publications
Scientific contributions of PADI-Web were published in PLOS ONE, Computers and Electronics in Agriculture (Elsevier), One Health (Elsevier), Scientific Data (Nature), Transboundary and emerging diseases (Wiley), etc.
Main publications:
- PADI-Web 1.0: Arsevska, E., Valentin, S., Rabatel, J., de Goër de Hervé, J., Falala, S., Lancelot, R., and Roche, M. (2018). Web monitoring of emerging animal infectious diseases integrated in the French Animal Health Epidemic Intelligence System. PLOS ONE, 13(8):e0199960. https://doi.org/10.1371/journal.pone.0199960 Selected as Best paper of IMIA Yearbook of Medical Informatics 2019 (with 2 other papers).
- PADI-Web 2.0: Valentin, S., Arsevska, E., Falala, S., de Goër de Hervé, J., Lancelot, R., Mercier, A., Rabatel, J., and Roche, M. (2020). Padi-web: A multilingual event-based surveillance system for monitoring animal infectious diseases. Comput. Electron. Agric., 169:105163. https://doi.org/10.1016/j.compag.2019.105163
- PADI-Web 3.0: Valentin, S., Arsevska, E., Rabatel, J., Falala, S., Mercier, A., Lancelot, R., and Roche, M. (2021a). PADI-web 3.0: A new framework for extracting and disseminating fine-grained information from the news for animal disease surveillance. One Health, 13:100357.https://doi.org/10.1016/j.onehlt.2021.100357
- Dataset: Valentin, S., Arsevska, E., Vilain, A., De Waele, V., Lancelot R., Roche M. (2022). Elaboration of a new framework for fine-grained epidemiological annotation. Scientific Data, 9:655, 12 p. https://doi.org/10.1038/s41597-022-01743-2
- Analysis of results: Valentin, S., Mercier, A., Lancelot, R., Roche, M., and Arsevska, E. (2021b). Monitoring online media reports for early detection of unknown diseases: Insight from a retrospective study of COVID-19 emergence. Transboundary and emerging diseases, 68:981–986. https://doi.org/10.1111/tbed.13738
Other publications - journals:
- Identifying associations between epidemiological entities in news data for animal disease surveillance. Valentin Sarah, Lancelot Renaud, Roche Mathieu. 2021. Artificial Intelligence in Agriculture, 5 : 163-174. https://doi.org/10.1016/j.aiia.2021.07.003
- PADI-web corpus: Labeled textual data in animal health domain. Rabatel Julien, Arsevska Elena, Roche Mathieu. 2019. Data in Brief, 22 : 643-646. https://doi.org/10.1016/j.dib.2018.12.063
- Système de veille automatique pour la détection de maladies animales émergentes. Roche Mathieu. 2017. Bulletin de l'Académie Nationale de Médecine, 201 (7-8-9) : 1197-1201. https://doi.org/10.1016/S0001-4079(19)30396-6
- Identification of associations between clinical signs and hosts to monitor the web for detection of animal disease outbreaks. Arsevska Elena, Roche Mathieu, Hendrikx Pascal, Chavernac David, Falala Sylvain, Lancelot Renaud, Dufour Barbara. 2016. International Journal of Agricultural and Environmental Information Systems, 7 (3) : 1-10. https://doi.org/10.4018/IJAEIS.2016070101
- Identification of terms for detecting early signals of emerging infectious disease outbreaks on the web. Arsevska Elena, Roche Mathieu, Hendrikx Pascal, Chavernac David, Falala Sylvain, Lancelot Renaud, Dufour Barbara. 2016. Computers and Electronics in Agriculture, 123 : 104-115. https://doi.org/10.1016/j.compag.2016.02.010
Other publications - proceedings:
- Automated processing of multilingual online news for the monitoring of animal infectious diseases. Valentin Sarah, Lancelot Renaud, Roche Mathieu. 2020. In : Proceedings of the LREC 2020 Workshop on Multilingual Biomedical Text Processing (MultiligualBIO 2020). Maite Melero (ed.). European Language Resources Association (ELRA). Paris : ELRA, 33-36. ISBN 979-10-95546-65-8 MultilingualBIO 2020, Marseille, France, 11 Mai 2020/16 Mai 2020. https://www.aclweb.org/anthology/2020.multilingualbio-1.0
- Information retrieval for animal disease surveillance: a pattern-based approach. Valentin Sarah, Lancelot Renaud, Roche Mathieu. 2020. In : Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis. Holderness Eben (ed.), Yepes Antonio Jimeno (ed.), Lavelli Alberto (ed.), Lavelli Anne-Lyse (ed.), Pustejovsky James (ed.), Rinaldi Fabio (ed). Stroudsburg : Association for Computational Linguistics, 70-78. (LOUHI, 2020) ISBN 978-1-952148-81-1 International Workshop on Health Text Mining and Information Analysis, 16 Novembre 2020/20 Novembre 2020. https://doi.org/10.18653/v1/2020.louhi-1.8
- PADI-web: An event-based surveillance system for detecting, classifying and processing online news. Valentin Sarah, Arsevska Elena, Mercier Alize, Falala Sylvain, Rabatel Julien, Lancelot Renaud, Roche Mathieu. 2020. In : Human language technology. Challenges for computer science and linguistics. Vetulani Zygmunt (ed.), Paroubek Patrick (ed.), Kubis Marek (ed.). Cham : Springer, 87-101. (Lecture Notes in Computer Science, 12598) ISBN 978-3-030-66526-5 Language and Technology Conference. 8, Poznan, Pologne, 17 Novembre 2017/19 Novembre 2017. https://doi.org/10.1007/978-3-030-66527-2_7
- PADI-web: un système automatique multilingue pour la veille sanitaire internationale en santé animale. Valentin Sarah, Rabatel Julien, Arsevska Elena, Falala Sylvain, De Goër Jocelyn, Mercier Alize, Lancelot Renaud, Roche Mathieu. 2019. In : Journées francophones d'ingénierie des connaissances IC PFIA 2019. AFIA. Toulouse : AFIA, 235-239. Journées francophones d'Ingénierie des Connaissances (IC 2019). 30, Toulouse, France, 2 Juillet 2019/4 Juillet 2019. https://www.irit.fr/pfia2019/ic/ic-2019-programme/
- PADI-web: Platform for Automated Extraction of Animal Disease Information from the Web. Arsevska Elena, Falala Sylvain, De Goër de Hervé Jocelyn, Lancelot Renaud, Rabatel Julien, Roche Mathieu. 2017. In : Human language technologies as a challenge for computer science and linguistics. Adam Mickiewicz University. Poznan : Adam Mickiewicz University, 241-245. Language and Technology Conference. 8, Poznan, Pologne, 17 Novembre 2017/19 Novembre 2017. http://ltc.amu.edu.pl/
- Monitoring disease outbreak events on the web using text-mining approach and domain expert knowledge. Arsevska Elena, Roche Mathieu, Falala Sylvain, Lancelot Renaud, Chavernac David, Hendrikx Pascal, Dufour Barbara. 2016. In : LREC 2016 Proceedings. Calzolari Nicoletta (ed.), Choukri Khalid (ed.) , Declerck Thierry (ed.) , Grobelnik Marko (ed.), Maegaard Bente (ed.), Mariani Joseph (ed.) , Moreno Asuncion (ed.), Odijk Jan (ed.), Piperidis Stelios (ed.). Paris : ELRA, 3407-3411. ISBN 978-2-9517408-9-1 International Conference on Language Resources and Evaluation. 10, Portoroz, Slovénie, 23 Mai 2016/28 Mai 2016. http://www.lrec-conf.org/proceedings/lrec2016/summaries/314.html
- Système de collecte de données Web pour analyser l'émergence et la propagation de maladies animales. Falala Sylvain, De Goër Jocelyn, Arsevska Elena, Roche Mathieu, Rabatel Julien, Chavernac David, Hendrikx Pascal, Lefrançois Thierry, Dufour Barbara, Lancelot Renaud. 2016. In : Actes des 27es Journées francophones d'Ingénierie des Connaissances. Pernelle Nathalie (ed.), Bringay Sandra (ed.). AFIA. Montpellier : AFIA, 239-241. IC2016 : Journées francophones d'Ingénierie des Connaissances. 27, Montpellier, France, 6 Juin 2016/10 Juin 2016. http://ic2016.sciencesconf.org/resource/page/id/32
- Système de veille sanitaire pour analyser l'émergence et la propagation de maladies animales. Falala Sylvain, De Goër Jocelyn, Arsevska Elena, Roche Mathieu, Rabatel Julien, Chavernac David, Hendrikx Pascal, Dufour Barbara, Lancelot Renaud, Lefrançois Thierry. 2016. In : INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l'Environnement. INRA. Montpellier : INRA, 40-41. Atelier IN-OVIVE. 4, Montpellier, France, 7 Juin 2016. https://ic2016.sciencesconf.org/resource/page/id/32
- Exploiting textual source information for epidemiosurveillance. Arsevska Elena, Roche Mathieu, Lancelot Renaud, Hendrikx Pascal, Dufour Barbara. 2014. In : Metadata and semantics research : 8th Research Conference, MTSR 2014, Karlsruhe, Germany, November 27-29, 2014, Proceedings. Closs Sissi (ed.), Studer Rudi (ed.), Garoufallou Emmanouel (ed.), Sicilia Miguel-Angel (ed.). Cham : Springer International Publishing, 359-361. (Communications in Computer and Information Science, 478) ISBN 978-3-319-13673-8 International Conference on Metadata and Semantics Research Conference. 8, Karlsruhe, Allemagne, 27 Novembre 2014/29 Novembre 2014.